miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042489
species: Sorghum bicolor
miRNA family: MIR156
source: miRBase, original name: sbi-MIR156e (MI0001856)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGCGAGCAC

miRNA*
GCTCGCTTCTCTTTCTGTCAGC

mismatches: 0
bulges: 2

View larger
pre-miRNA
CGATTAGGCCCTGAAGAGATTGACAGAAGAGAGCGAGCACCCGGCGCGGCGGCCGGCATGGAGCGCATGCCGTCCCCGCCGCGTGCTCGCTTCTCTTTCT
GTCAGC
CTCTCTCTCGTCCTGGG


dot-bracket secondary structure
...(((((.(..((((((..((((((((((((((((((((.(((((.((.(((.((((((.....)))))))))))))))).)))))))).)))).))))
))))..
)))).))..).))))).



SIMILARITIES
miRBase zma-MIR156k: 1e-50

PMRD sbi-miR156e: 1e-65

microPC miR156: 2e-30
UniProt no hits

RFAM mir-156: 3e-42

Identical with: sbi-miR156e from PMRD (MNEST054397)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




Liczniki na strone;